Data and Software for Degiacomi et al, Structure, 2017

Degiacomi, Matteo T. (Durham University, UK); Benesch, Justin L. P. (University of Oxford, UK); Schmidt, Carla (Martin Luther University Halle-Wittenberg, Germany); Baldwin, Andrew J. (University of Oxford, UK)

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Data and Software for Degiacomi et al, Structure, 2017 Open Access

Research paper highlights: - Accounting for protein dynamics is key to measurement of cross-linking distances. - DynamXL is software that explicitly accommodates dynamics in cross-linking - DynamXL models side-chain rotamers and allows analysis of structural ensembles. - This method improves data interpretation and protein docking performance.

Descriptions

Resource type: Dataset
Contributors: Creator: Degiacomi, Matteo T. ¹
Contact person: Degiacomi, Matteo T. ¹
Data collector: Degiacomi, Matteo T. ¹
Data curator: Degiacomi, Matteo T. ¹
Creator: Benesch, Justin L. P. ²
Contact person: Benesch, Justin L. P. ²
Creator: Schmidt, Carla ³
Creator: Baldwin, Andrew J. ²

¹ Durham University, UK
² University of Oxford, UK
³ Martin Luther University Halle-Wittenberg, Germany
Funder: Schweizerische Nationalfonds zur Förderung der Wissenschaftlichen Forschung
Biotechnology and Biological Sciences Research Council
Engineering and Physical Sciences Research Council
Royal Society
Research methods
Other description: Data and Software supporting Degiacomi et al study about a new method and associated software, DynamXL, that accommodates intrinsic protein dynamics in the modelling of cross-linking data. This approach substantially reduces error rates, leading to higher confidence in structure assessment and improved protein-protein docking.
Keyword: cross-linking
molecular modelling
protein docking
mass spectrometry
computational structural biology
Subject: Molecular structure
Proteins--Crosslinking
Mass spectrometry
Computational biology
Computer software
Location
Language: English
Cited in
Identifier: ark:/32150/r27s75dc36z
doi:10.15128/r27s75dc36z
Publisher: Durham University
Date Created

File Details

Depositor: M.T. Degiacomi
Date Uploaded: 12 October 2017, 15:10:54
Date Modified: 13 October 2017, 10:10:03
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Characterization: File format: x-gzip (GZIP Format, GZIP)

Mime type: application/x-gzip

File size: 846926318

Last modified: 2017:10:12 16:26:24+01:00

Filename: 2017_Structure_dynamxl.tar.gz

Original checksum: b7b88e0566172fe88991dc984abd4323

Activity of users you follow
User Activity	Date
User M.T. Degiacomi has updated Data and Software for Degiacomi et al, Structure, 2017	about 7 years ago
User M.T. Degiacomi has updated Data and Software for Degiacomi et al, Structure, 2017	about 7 years ago
User M.T. Degiacomi has updated Data and Software for Degiacomi et al, Structure, 2017	about 7 years ago
User M.T. Degiacomi has deposited 2017_Structure_dynamxl.tar.gz	about 7 years ago