seed 5 										#seed for random number generator  
tottypes 3 5									#total number of chain types and max chain length in sytem - this should be 1 more than in the setup file as the client has been added
totchains 16									#deprecated variable
newchain 1 12500 5 1								#chain details <length of chain> <number of chains> <linker length> <bead type>
newchain 1 12500 5 2								#chain details <length of chain> <number of chains> <linker length> <bead type>
client 10 1 2 2 2 2 2 2 2 2 2 2 2						#client details <length of chain> <number of chains> <linker length> <bead type>
lattice_dimensions 50								#box dimensions  
sim_time 1000000								#number of moves to attempt (this is multiplied by 1000 in the code
equib_time 0									#number of equilibration steps              
kT 0.1258        								#sets the value of kT
film TRUE									#logical for whether trajectory file is generated
debugyes TRUE									#logical determining whether the debug subroutine is called
intraen 0.0									#real number determining the isotropic intrachain interactions
#dir-iso        intra	  1           2	        3	       			#interaction strength matrix
interaction 1   0.0    0.0 0.0     1.0 0.0    0.0 0.0				#<like-bead directional interactions> <directional interchain interactions> <isotropic interchain interactions>  <directional interchain interactions> <isotropic interchain interactions>
interaction 2   0.0    1.0 0.0     0.0 0.0    0.0 0.0
interaction 3   0.0    0.0 0.0     0.0 0.0    0.0 0.0
noinfo FALSE									#logical to determine whether no results are output
scaleinfo FALSE									#logical to determine whether simulation is only running to get the ROG and ETE cling parameters of a single chain (development tool)
restart FALSE									#logical TRUE is simuation is restarting from previous configuration 
freeze 12									#selects the number of system configurations to skip to get to the one used for the simulation run
path ../../../../base0.1/movetagged.vtf						#gives path to location of the system configuration trajectory file

